#######无法下载的包 的解决方案
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Seurat", type="binary")
library("BiocManager")
library(devtools)
install_github("navinlabcode/copykat")
#没有注释 要跑inferCNV
library(dlm)
library(copykat)
install.packages("dlm", type="binary" )
#https://bbs.pinggu.org/thread-2509387-1-1.html Warning: 无法将拆除原来安装的程序包‘survival’
#https://blog.csdn.net/qq_21478261/article/details/109436817 包安装Permission denied 问题解决
# 'cli', 'commonmark', 'data.table', 'digest', 'e1071', 'graphlayouts', 'jsonlite', 'maptools', 'minqa', 'openssl', 'openxlsx',
# 'pcaPP', 'phyclust', 'polyclip', 'processx', 'ps', 'ragg', 'RcppAnnoy', 'rrcov', 'spatstat.data', 'spatstat.geom', 'spatstat.sparse',
# 'spatstat.utils', 'sys', 'vctrs', 'xfun', 'XML', 'yaml', 'zip', 'MASS', 'mgcv', 'nlme', 'rpart', 'survival'
#
# 'cli' 'digest' jsonlite' 'processx''ps' 'vctrs 'MASS' 'nlme' 'survival'
#
# remove.packages(c("ps",'vctrs', 'MASS','nlme','survival'))
# remove.packages( 'survival')
#
# library('survival')
# .libPaths()
# https://blog.csdn.net/oyy_90/article/details/91451324
# source("http://bioconductor.org/biocLite.R")
# biocLite("copykat")
#https://blog.csdn.net/qq_42808290/article/details/90033503 安装程序包****时退出的状态不是0”
#https://www.jianshu.com/p/3a8ead5bafcd
#https://www.coder.work/article/7607728
library(devtools)
install.packages("devtools")
#https://www.jianshu.com/p/160cdfaae6ad
remove.packages( 'digest')
install.packages("installr")
library(installr)
updateR()
# https://www.jianshu.com/p/e1459fa073fb
# 意思就是上一次安装被异常打断了，为了解决这个问题，必须要手动删除这个locked文件。
unlink("C:/Users/Lvzi/AppData/Local/R/R-4.0.2/library/00LOCK-copykat")
install.packages("backports")
unlink("C:/Users/Lvzi/AppData/Local/R/R-4.0.2/library/00LOCK-digest")
.libPaths( "C:/Users/Lvzi/AppData/Local/R/win-library/4.2")
# export R_LIBS_USER = C:/Users/Lvzi/AppData/Local/R/win-library/4.2
in